Stem-loop mdm-MIR399i

Accession

MI0023113

Description

Malus domestica mdm-MIR399i precursor miRNA

Literature search

7 open access papers mention mdm-MIR399i
(9 sentences)

Sequence

12309 reads, 1026.0 reads per million, 30 experiments

uaagcaaaucagucauaGGGCUCCUCCCUCUUGGCAGGcacuggugaaugaugcaacuacaaucacuuucauugacuUGCCAAAGGAGAGUUGCCCUGcgauugcuuuagcuua
((((((((.(((((.((((((..((((((.((((((((((...(((((((((.........))))..))))))).))))))))))).)))..)))))).))))).))).)))))

Structure

     -   u     a      UC   -   C        -  cug     --    gca 
uaagc aaa caguc uaGGGC  CUC CCU UUGGCAGG ca   gugaa  ugau   a
||||| ||| ||||| ||||||  ||| ||| |||||||| ||   |||||  ||||   c
auucg uuu guuag GUCCCG  GAG GGA AACCGUuc gu   uacuu  acua   u
     a   c     c      UU   A   -        a  ---     uc    aca 

Annotation confidence High

Genome context

MDC008043.242: 29962-30075 [+]

Mature mdm-miR399i-5p

• Accession: MIMAT0056686
• Description: Malus domestica mdm-miR399i-5p mature miRNA
• Sequence: 18 - GGGCUCCUCCCUCUUGGCAGG - 38
• Evidence: experimental ; unknown

Mature mdm-miR399i-3p

• Accession: MIMAT0026009
• Description: Malus domestica mdm-miR399i-3p mature miRNA
• Sequence: 78 - UGCCAAAGGAGAGUUGCCCUG - 98
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47