Stem-loop mdm-MIR403a

Accession

MI0023115

Description

Malus domestica mdm-MIR403a precursor miRNA

Literature search

2 open access papers mention mdm-MIR403a
(14 sentences)

Sequence

59228 reads, 6159.0 reads per million, 32 experiments

agacgggacacaucuccAGUUUGUGCGUGAAUCGAACCccuuuuagccguccaucuguuugauagauaauccaacggugUUAGAUUCACGCACAAACUCGugaucagucuccucu
(((.(((((..(((.(.((((((((((((((((.(((.((........(((.(((.....))).)))........)).))).)))))))))))))))).).)))..))))).)))

Structure

   c     ac   u c                G   C  uuuuagcc   c   u 
aga gggac  auc c AGUUUGUGCGUGAAUC AAC cc        guc auc g
||| |||||  ||| | |||||||||||||||| ||| ||        ||| ||| u
ucu cucug  uag G UCAAACACGCACUUAG UUg gg        uag uag u
   c     ac   u C                A   u  caaccuaa   a   u 

Annotation confidence High

Genome context

MDC006429.384: 17645-17759 [+]

Mature mdm-miR403a-5p

• Accession: MIMAT0056688
• Description: Malus domestica mdm-miR403a-5p mature miRNA
• Sequence: 18 - AGUUUGUGCGUGAAUCGAACC - 38
• Evidence: experimental ; unknown

Mature mdm-miR403a-3p

• Accession: MIMAT0026011
• Description: Malus domestica mdm-miR403a-3p mature miRNA
• Sequence: 80 - UUAGAUUCACGCACAAACUCG - 100
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47