Stem-loop mdm-MIR403b

Accession

MI0023116

Description

Malus domestica mdm-MIR403b precursor miRNA

Literature search

2 open access papers mention mdm-MIR403b
(9 sentences)

Sequence

59100 reads, 6193.0 reads per million, 32 experiments

gacggggcacaucuccaguuugugccugaaucaaaccCCAUCUCAGCUGUCCAUCugucugauggcuaauccaacggugUUAGAUUCACGCACAAACUCGugaucugucuccuc
((.((((((.(((.(.(((((((((.((((((.(((.((.........(.(((((.....)))))).........)).))).)))))).))))))))).).))).)))))).))

Structure

  c      c   u c         c      a   c  AUCUCAGCU U     u 
ga ggggca auc c aguuugugc ugaauc aac CC         G CCAUC g
|| |||||| ||| | ||||||||| |||||| ||| ||         | ||||| u
cu cucugu uag G UCAAACACG ACUUAG UUg gg         c gguag c
  c      c   u C         C      A   u  caaccuaau -     u 

Annotation confidence Low

Genome context

MDC002523.549: 17325-17438 [-]

Mature mdm-miR403b-5p

• Accession: MIMAT0056689
• Description: Malus domestica mdm-miR403b-5p mature miRNA
• Sequence: 38 - CCAUCUCAGCUGUCCAUC - 55
• Evidence: experimental ; unknown

Mature mdm-miR403b-3p

• Accession: MIMAT0026012
• Description: Malus domestica mdm-miR403b-3p mature miRNA
• Sequence: 80 - UUAGAUUCACGCACAAACUCG - 100
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47