Stem-loop mdm-MIR408a

Accession

MI0023117

Description

Malus domestica mdm-MIR408a precursor miRNA

Literature search

4 open access papers mention mdm-MIR408a
(19 sentences)

Sequence

355772 reads, 21648.0 reads per million, 31 experiments

ggaaagagaguuaauaagACAGGGAAGAGGUAGAGCAUGgauggaguucucaagagcaaaauagagcucuugugacucuacucAUGCACUGCCUCUUCCCUGGCUuugccucccucuccuucc
((((.(((((.....(((.((((((((((((((.((((((.(((((((..(((((((........))))))).))))))).)))))).)))))))))))))).))).......))))).))))

Structure

    a     --uuaau   A              A      a       cu       aaa 
ggaa gagag       aag CAGGGAAGAGGUAG GCAUGg uggaguu  caagagc   a
|||| |||||       ||| |||||||||||||| |||||| |||||||  |||||||    
ccuu cucuc       uUC GUCCCUUCUCCGUC CGUAcu aucucag  guucucg   u
    c     ccuccgu   G              A      c       -u       aga 

Annotation confidence High

Genome context

MDC006505.260: 3714-3836 [-]

Mature mdm-miR408a-5p

• Accession: MIMAT0056690
• Description: Malus domestica mdm-miR408a-5p mature miRNA
• Sequence: 19 - ACAGGGAAGAGGUAGAGCAUG - 39
• Evidence: experimental ; unknown

Mature mdm-miR408a-3p

• Accession: MIMAT0026013
• Description: Malus domestica mdm-miR408a-3p mature miRNA
• Sequence: 84 - AUGCACUGCCUCUUCCCUGGCU - 105
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47