Stem-loop mdm-MIR535a

Accession

MI0023128

Description

Malus domestica mdm-MIR535a precursor miRNA

Literature search

5 open access papers mention mdm-MIR535a
(11 sentences)

Sequence

7570 reads, 334.0 reads per million, 27 experiments

gauguugugUGACAACGAGAGAGAGCACGCuugucaucacgcaugaaaggaucaugguuguuuacgggcGUGCCCUCUCUUGUUGUCAUUcgguc
....(((.(((((((((((((((.((((((((((...((..(((((.....)))))..))...)))))))))).))))))))))))))).)))..

Structure

gaug   u               A          cau  cg     a 
    uug gUGACAACGAGAGAG GCACGCuugu   ca  cauga a
    ||| ||||||||||||||| ||||||||||   ||  ||||| g
    ggc UACUGUUGUUCUCUC CGUGcgggca   gu  guacu g
--cu   U               C          uuu  ug     a 

Annotation confidence High

Genome context

MDC012353.216: 34184-34278 [+]

Mature mdm-miR535a-5p

• Accession: MIMAT0026024
• Description: Malus domestica mdm-miR535a-5p mature miRNA
• Sequence: 10 - UGACAACGAGAGAGAGCACGC - 30
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR535a-3p

• Accession: MIMAT0056698
• Description: Malus domestica mdm-miR535a-3p mature miRNA
• Sequence: 70 - GUGCCCUCUCUUGUUGUCAUU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47