Stem-loop mdm-MIR827

Accession

MI0023132

Description

Malus domestica mdm-MIR827 precursor miRNA

Literature search

4 open access papers mention mdm-MIR827
(4 sentences)

Sequence

24829 reads, 1700.0 reads per million, 26 experiments

uuugcagcaguggauaugUUUGUUGCUGGUCACCUAGUUauuccaugguuccauccaucugcuggcuucaauauauaauuuguguuuguauauguuguauauauacaugcaguauuguauauuugacccauggcggacguucugaUUAGAUGACCAUCAACGAACAcauucaugaugcaag
.(((((...((((((.(((((((((.((((((.(((((((....((((......))))(((((((.((.((((((((((...(((.(((((((((...))))))))).)))..)))))))))).)).))..)))))......))))))).)))))).))))))))).))))))..))))).

Structure

u     gca      a         C      C       uuccaugguuccauccau     --  c  c          uug   u         u 
 uugca   guggau ugUUUGUUG UGGUCA CUAGUUa                  cugcu  gg uu aauauauaau   ugu uguauaugu  
 |||||   |||||| ||||||||| |||||| |||||||                  |||||  || || ||||||||||   ||| ||||||||| g
 aacgu   uacuua ACAAGCAAC ACCAGU GAUUagu                  ggcgg  cc ag uuauauguua   acg acauauaua  
g     -ag      c         U      A       ------------cuugca     ua  c  u          -ug   u         u 

Annotation confidence High

Genome context

MDC007691.315: 6054-6234 [+]

Mature mdm-miR827-5p

• Accession: MIMAT0056702
• Description: Malus domestica mdm-miR827-5p mature miRNA
• Sequence: 19 - UUUGUUGCUGGUCACCUAGUU - 39
• Evidence: experimental ; unknown

Mature mdm-miR827-3p

• Accession: MIMAT0026028
• Description: Malus domestica mdm-miR827-3p mature miRNA
• Sequence: 146 - UUAGAUGACCAUCAACGAACA - 166
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47