Stem-loop mdm-MIR828b

Accession

MI0023134

Description

Malus domestica mdm-MIR828b precursor miRNA

Literature search

5 open access papers mention mdm-MIR828b
(93 sentences)

Sequence

321 reads, 54.0 reads per million, 27 experiments

uccucuucguaauguuUCUUGCUCAAAUGAGUAUUCCAgccacaguuugcaugcagcuugcauauauauauauaagaacauguauguguauauauauauagcacuggugcuucugcaauccugAGAUGCUCAUUUGGGCAAGCAAcguuacaagagga
(((((((.((((((((.((((((((((((((((((.(((.....(.(((((.(((.(.(((.((((((((((((...(((....))).)))))))))))))))..).)))...))))).)))).)))))))))))))))))).)))))))))))))))

Structure

       c        U                  C   ccaca u     --u   g -u   a            aga   u 
uccucuu guaauguu CUUGCUCAAAUGAGUAUU CAg     g uugca   gca c  ugc uauauauauaua   aca g
||||||| |||||||| |||||||||||||||||| |||     | |||||   ||| |  ||| ||||||||||||   |||  
aggagaa cauugcAA GAACGGGUUUACUCGUAG guc     c aacgu   cgu g  acg auauauauauau   ugu u
       -        C                  A   ----- u     cuu   g uc   -            --g   a 

Annotation confidence High

Genome context

MDC003205.158: 33351-33508 [+]

Mature mdm-miR828b-5p

• Accession: MIMAT0026030
• Description: Malus domestica mdm-miR828b-5p mature miRNA
• Sequence: 17 - UCUUGCUCAAAUGAGUAUUCCA - 38
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR828b-3p

• Accession: MIMAT0056703
• Description: Malus domestica mdm-miR828b-3p mature miRNA
• Sequence: 124 - AGAUGCUCAUUUGGGCAAGCAA - 145
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47