Stem-loop mdm-MIR408b

Accession

MI0023135

Description

Malus domestica mdm-MIR408b precursor miRNA

Literature search

4 open access papers mention mdm-MIR408b
(17 sentences)

Sequence

81109 reads, 4652.0 reads per million, 31 experiments

ACAGGGAAGAGGUAGAGCAUGgauggaguucucaagagcaaaauagagcucuugugacucuacucAUGCACUGCCUCUUCCCUGG
.((((((((((((((.((((((.(((((((..(((((((........))))))).))))))).)))))).)))))))))))))).

Structure

A              A      a       cu       aaa 
 CAGGGAAGAGGUAG GCAUGg uggaguu  caagagc   a
 |||||||||||||| |||||| |||||||  |||||||    
 GUCCCUUCUCCGUC CGUAcu aucucag  guucucg   u
G              A      c       -u       aga 

Annotation confidence High

Genome context

MDC006859.349: 17335-17419 [-]

Mature mdm-miR408b-5p

• Accession: MIMAT0026031
• Description: Malus domestica mdm-miR408b-5p mature miRNA
• Sequence: 1 - ACAGGGAAGAGGUAGAGCAUG - 21
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR408b-3p

• Accession: MIMAT0056704
• Description: Malus domestica mdm-miR408b-3p mature miRNA
• Sequence: 66 - AUGCACUGCCUCUUCCCUGG - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47