Stem-loop mdm-MIR408d

Accession

MI0023137

Description

Malus domestica mdm-MIR408d precursor miRNA

Literature search

4 open access papers mention mdm-MIR408d
(17 sentences)

Sequence

81110 reads, 4650.0 reads per million, 31 experiments

ACAGGGAAGAGGUAGAGCAUGgauggaguucucaagagcaaaauagagcucuugugacucuacucAUGCACUGCCUCUUCCCUGG
.((((((((((((((.((((((.(((((((..(((((((........))))))).))))))).)))))).)))))))))))))).

Structure

A              A      a       cu       aaa 
 CAGGGAAGAGGUAG GCAUGg uggaguu  caagagc   a
 |||||||||||||| |||||| |||||||  |||||||    
 GUCCCUUCUCCGUC CGUAcu aucucag  guucucg   u
G              A      c       -u       aga 

Annotation confidence High

Genome context

MDC016595.160: 1340-1424 [+]

Mature mdm-miR408d-5p

• Accession: MIMAT0026033
• Description: Malus domestica mdm-miR408d-5p mature miRNA
• Sequence: 1 - ACAGGGAAGAGGUAGAGCAUG - 21
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR408d-3p

• Accession: MIMAT0056706
• Description: Malus domestica mdm-miR408d-3p mature miRNA
• Sequence: 66 - AUGCACUGCCUCUUCCCUGG - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47