Stem-loop mdm-MIR2118a

Accession

MI0023138

Description

Malus domestica mdm-MIR2118a precursor miRNA

Literature search

1 open access papers mention mdm-MIR2118a
(5 sentences)

Sequence

65066 reads, 3332.0 reads per million, 28 experiments

gagagaagggggaaagggagaaagaguuugaggaaguuauuGGACUUAGUAGCUCGGUGAGAaaacauugaggaucuggaguucuucuucucCUACCGAUGCCACUAAGUCCCAugauuuccucugccuccuccuuuucccaccuuuuuuc
((((((((((((((((((((...(((...(((((((((((.(((((((((.((((((((((((......(((((........))))))))))..))))).)).))))))))).)))))))))))...)))))))))))))).)))))))))

Structure

         -           aaa   uuu           u         A  -     --     aacauu     ucu 
gagagaagg gggaaagggag   gag   gaggaaguuau GGACUUAGU GC UCGGU  GAGAa      gagga   g
||||||||| |||||||||||   |||   ||||||||||| ||||||||| || |||||  |||||      |||||    
cuuuuuucc cccuuuuccuc   cuc   cuccuuuaguA CCUGAAUCA CG AGCCA  cucuu      cuucu   g
         a           ---   cgu           C         C  U     UC     ------     uga 

Annotation confidence High

Genome context

MDC017130.228: 6718-6868 [+]

Mature mdm-miR2118a-5p

• Accession: MIMAT0056707
• Description: Malus domestica mdm-miR2118a-5p mature miRNA
• Sequence: 42 - GGACUUAGUAGCUCGGUGAGA - 62
• Evidence: experimental ; unknown

Mature mdm-miR2118a-3p

• Accession: MIMAT0026034
• Description: Malus domestica mdm-miR2118a-3p mature miRNA
• Sequence: 93 - CUACCGAUGCCACUAAGUCCCA - 114
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47