Stem-loop mdm-MIR2118b

Accession

MI0023139

Description

Malus domestica mdm-MIR2118b precursor miRNA

Literature search

1 open access papers mention mdm-MIR2118b
(5 sentences)

Sequence

65665 reads, 3558.0 reads per million, 26 experiments

gagguugaggaaguuauaGGACUUAGUUGCUCGGUGAGAaaaccugaugaucuggaguccuucuucucCUACCGAUGCCACUAAGUCCCAugauuuccucucccuc
((((..(((((((((((.(((((((((.((((((((((((.....(((........)))....)))))..))))).)).))))))))).)))))))))))..))))

Structure

    uu           a         U  -     --     aaccu   gau 
gagg  gaggaaguuau GGACUUAGU GC UCGGU  GAGAa     gau   c
||||  ||||||||||| ||||||||| || |||||  |||||     |||    
cucc  cuccuuuaguA CCUGAAUCA CG AGCCA  cucuu     cug   u
    cu           C         C  U     UC     -cuuc   agg 

Annotation confidence High

Genome context

MDC019300.125: 1293-1398 [-]

Mature mdm-miR2118b-5p

• Accession: MIMAT0056708
• Description: Malus domestica mdm-miR2118b-5p mature miRNA
• Sequence: 19 - GGACUUAGUUGCUCGGUGAGA - 39
• Evidence: experimental ; unknown

Mature mdm-miR2118b-3p

• Accession: MIMAT0026035
• Description: Malus domestica mdm-miR2118b-3p mature miRNA
• Sequence: 69 - CUACCGAUGCCACUAAGUCCCA - 90
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47