Stem-loop mdm-MIR2118c

Accession

MI0023140

Description

Malus domestica mdm-MIR2118c precursor miRNA

Literature search

1 open access papers mention mdm-MIR2118c
(5 sentences)

Sequence

65661 reads, 3432.0 reads per million, 27 experiments

gagguugaggaaguuauaGGACUUAGUUGCUCGGUGAGAaaaccugaugaucuggaguccuucucCUACCGAUGCCACUAAGUCCCAugauuuccucucccuc
((((..(((((((((((.(((((((((.((((((((((((.((((........)).))..)))))..))))).)).))))))))).)))))))))))..))))

Structure

    uu           a         U  -     --     -a  -  gau 
gagg  gaggaaguuau GGACUUAGU GC UCGGU  GAGAa  ac cu   g
||||  ||||||||||| ||||||||| || |||||  |||||  || ||    
cucc  cuccuuuaguA CCUGAAUCA CG AGCCA  cucuu  ug gg   a
    cu           C         C  U     UC     cc  a  ucu 

Annotation confidence High

Genome context

MDC019300.66: 1879-1981 [-]

Mature mdm-miR2118c-5p

• Accession: MIMAT0056709
• Description: Malus domestica mdm-miR2118c-5p mature miRNA
• Sequence: 19 - GGACUUAGUUGCUCGGUGAGA - 39
• Evidence: experimental ; unknown

Mature mdm-miR2118c-3p

• Accession: MIMAT0026036
• Description: Malus domestica mdm-miR2118c-3p mature miRNA
• Sequence: 66 - CUACCGAUGCCACUAAGUCCCA - 87
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47