Stem-loop mdm-MIR7120a

Accession

MI0023141

Description

Malus domestica mdm-MIR7120a precursor miRNA

Sequence

37887 reads, 2103.0 reads per million, 31 experiments

auguauguauauguauuaaaauguucuuuugccagccaauguggcUUGUUAUAUUGUCAGAUUGUCaaucugaaccuuuaauuaccauuaauuuacguaauuaaugguucagauugaCAGUCUGACAAUAUAACGUGCcaaacuguuuggcaauugagcauuuucauacauauauauauau
((((((((((((((((.(((((((((..(((((((.((...((((.((((((((((((((((((((((((((((((.((((((((...........)))))))).)))))))))))))))))))))))))))))).))))...)).)))))))..))))))))).))))))))))))))))

Structure

                u         uu       c  aug    U                              u        cauu 
auguauguauauguau aaaauguuc  uugccag ca   uggc UGUUAUAUUGUCAGAUUGUCaaucugaacc uuaauuac    a
|||||||||||||||| |||||||||  ||||||| ||   |||| |||||||||||||||||||||||||||||| ||||||||    a
uauauauauauacaua uuuuacgag  aacgguu gu   acCG GCAAUAUAACAGUCUGACaguuagacuugg aauuaaug    u
                c         uu       u  caa    U                              u        cauu 

Annotation confidence High

Genome context

MDC017840.207: 3632-3812 [+]

Mature mdm-miR7120a-5p

• Accession: MIMAT0026037
• Description: Malus domestica mdm-miR7120a-5p mature miRNA
• Sequence: 46 - UUGUUAUAUUGUCAGAUUGUC - 66
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR7120a-3p

• Accession: MIMAT0037472
• Description: Malus domestica mdm-miR7120a-3p mature miRNA
• Sequence: 118 - CAGUCUGACAAUAUAACGUGC - 138
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47


2. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812