Stem-loop mdm-MIR7123b

Accession

MI0023155

Description

Malus domestica mdm-MIR7123b precursor miRNA

Literature search

1 open access papers mention mdm-MIR7123b
(1 sentences)

Sequence

4482 reads, 297.0 reads per million, 26 experiments

gcuacaucgaaaaccugacgauagucacugacacuaucaguuucaAAGAGCGGGAUGUGUAAAAGGucuacuagcugguugcaugcauguaaauaugacgauacaaccacuauuakgccUUUUACCUAUCCCAUUCUGUGccacuaagugcccgugauuauugucaguuucuuuugcaguggc
(((((..(((((..((((((((((((((.(.((((...(((..((.((((.((((((.(((((((((.((.(((.((((((.(((((((....)))).).)).))))))))).)).))))))))).)))))).)))).))..))).)))).).))))))))))))))....)))))..)))))

Structure

     au     --ac              u a    auc   uu  A    C      U         c  c   c      c  - -    u 
gcuac  cgaaa    cugacgauagucac g cacu   agu  ca AGAG GGGAUG GUAAAAGGu ua uag ugguug au g caug a
|||||  |||||    |||||||||||||| | ||||   |||  || |||| |||||| ||||||||| || ||| |||||| || | ||||  
cggug  guuuu    gacuguuauuagug c guga   uca  GU UCUU CCCUAU CAUUUUccg au auc accaac ua c guau a
     ac     cuuu              c c    --a   cc  G    A      C         k  u   -      a  g a    a 

Annotation confidence High

Genome context

MDC010449.276: 9258-9440 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR7123b

Mature mdm-miR7123b-5p

• Accession: MIMAT0026051
• Description: Malus domestica mdm-miR7123b-5p mature miRNA
• Sequence: 46 - AAGAGCGGGAUGUGUAAAAGG - 66
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR7123b-3p

• Accession: MIMAT0056722
• Description: Malus domestica mdm-miR7123b-3p mature miRNA
• Sequence: 120 - UUUUACCUAUCCCAUUCUGUG - 140
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47