Stem-loop mdm-MIR5225b

Accession

MI0023161

Description

Malus domestica mdm-MIR5225b precursor miRNA

Literature search

4 open access papers mention mdm-MIR5225b
(9 sentences)

Sequence

aucaaagcguagggacuUCUGUCGAAGGUGAGAUGGUGCcgaaggccauguauauugguagcugcgauuacaagcuuuauauagcuagucaauucaggccagcgagcuucaucccuccucgacugaagccucucacgcuuugau
((((((((((((((.((((.(((((.((.(.(((((.((((..((((.((...((((((((((((........)).......))))).))))).))))))..)).)).))))).).))))))).)))).)))).))))))))))

Structure

          -    a    U     A  U A     U  -  aa    a  uau     -     -------  gau 
aucaaagcgu aggg cuUC GUCGA GG G GAUGG GC cg  ggcc ug   auugg uagcu       gc   u
|||||||||| |||| |||| ||||| || | ||||| || ||  |||| ||   ||||| |||||       ||    
uaguuucgca ucuc gaag cagcu cc c cuacu cg gc  ccgg ac   uaacu aucga       cg   a
          c    c    u     -  u c     u  a  ga    -  --u     g     uauauuu  aac 

Annotation confidence Not enough data

Genome context

MDC003092.253: 6584-6727 [+]

Mature mdm-miR5225b

• Accession: MIMAT0026057
• Description: Malus domestica mdm-miR5225b mature miRNA
• Sequence: 18 - UCUGUCGAAGGUGAGAUGGUGC - 39
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47