Stem-loop mdm-MIR319c

Accession

MI0023162

Description

Malus domestica mdm-MIR319c precursor miRNA

Literature search

4 open access papers mention mdm-MIR319c
(9 sentences)

Sequence

121751 reads, 9027.0 reads per million, 31 experiments

aggagcucuucuucaguccaguccggggcrguuuaagggcugacacucAGCUGCUGACUCGUUGGUUCAagaacucaucguacaaaugcuaaaagaagugguguguuucugauccaacgaagcaggagcugagagguugguuauugcagucgcgucUUGGACUGAAGGGAGCUCCu
(((((((((.(((((((((((..((.(((.((.....(((((((.(((((((.(((..(((((((.(((.((((.((((........(((......))))))).)))).))).)))))))..))).)))))))..)))))))...)).))).))..))))))))))))))))))))

Structure

         u           uc  g   r  uuaag       -a       G   AC       U   a    u    guacaaau   aa 
aggagcucu cuucaguccag  cg ggc gu     ggcugac  cucAGCU CUG  UCGUUGG UCA gaac cauc        gcu  a
||||||||| |||||||||||  || ||| ||     |||||||  ||||||| |||  ||||||| ||| |||| ||||        |||   
uCCUCGAGG GAAGUCAGGUU  gc cug cg     uugguug  gagucga gac  agcaacc agu uuug gugg        uga  a
         -           cu  g   a  --uua       ga       g   ga       u   c    u    --------   ag 

Annotation confidence Low

Genome context

MDC009318.175: 3694-3869 [+]

Mature mdm-miR319c-5p

• Accession: MIMAT0037474
• Description: Malus domestica mdm-miR319c-5p mature miRNA
• Sequence: 49 - AGCUGCUGACUCGUUGGUUCA - 69
• Evidence: experimental ; Illumina [2]

Mature mdm-miR319c-3p

• Accession: MIMAT0026058
• Description: Malus domestica mdm-miR319c-3p mature miRNA
• Sequence: 157 - UUGGACUGAAGGGAGCUCC - 175
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47


2. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812