Stem-loop mdm-MIR7125

Accession

MI0023163

Description

Malus domestica mdm-MIR7125 precursor miRNA

Literature search

3 open access papers mention mdm-MIR7125
(5 sentences)

Sequence

7507 reads, 551.0 reads per million, 25 experiments

aaagcucucaaaugcaaGCUAGUUGUAAUAAGUUCAAUcuuuuuauggccaguagugcccuaaauaagcauCGAACUUAUUGCAACUAGCUUuaauuuuugaguuuu
(((((((..((((..((((((((((((((((((((.(((((((((.((((....).))).)))).))).)).))))))))))))))))))))..))))..)))))))

Structure

       uc    gc                    A  -   -    u   - a 
aaagcuc  aaau  aaGCUAGUUGUAAUAAGUUC AU cuu uuua ggc c g
|||||||  ||||  |||||||||||||||||||| || ||| |||| ||| |  
uuuugag  uuua  UUCGAUCAACGUUAUUCAAG ua gaa aaau ccg g u
       uu    au                    C  c   u    c   u a 

Annotation confidence High

Genome context

MDC008558.180: 6437-6543 [+]

Mature mdm-miR7125-5p

• Accession: MIMAT0056727
• Description: Malus domestica mdm-miR7125-5p mature miRNA
• Sequence: 18 - GCUAGUUGUAAUAAGUUCAAU - 38
• Evidence: experimental ; unknown

Mature mdm-miR7125-3p

• Accession: MIMAT0026059
• Description: Malus domestica mdm-miR7125-3p mature miRNA
• Sequence: 72 - CGAACUUAUUGCAACUAGCUU - 92
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47