Stem-loop mdm-MIR7126

Accession

MI0023164

Description

Malus domestica mdm-MIR7126 precursor miRNA

Literature search

2 open access papers mention mdm-MIR7126
(2 sentences)

Sequence

gcggaaaccccaauuaggacuAAAGUAUCAAGGAGCGCAAAGagaagcagaaagaucgccgccgcuuuucacccgaaucguaggccuuuggcgucucugcucguaucuUUGCGUUCCACUGAUUCUUUCGcccuaauuggguccgacccgc
.((((...((((((((((.(.((((.((((.((((((((((((..((((((..((.(((((((((..(((....)))..)).)))....))))))))))))....))))))))))))..)))).)))).).))))))))))))))......

Structure

-----g    aac          a u    U    -A            --ga      aa  u    ----   -  uu   a 
      cgga   cccaauuagg c AAAG AUCA  GGAGCGCAAAGa    agcaga  ga cgcc    gcc gc  uuc c
      ||||   |||||||||| | |||| ||||  ||||||||||||    ||||||  || ||||    ||| ||  |||  
      gccu   ggguuaaucc G UUUC UAGU  CCUUGCGUUucu    ucgucu  cu gcgg    cgg ug  aag c
cgccca    ---          c C    U    CA            augc      --  -    uuuc   a  cu   c 

Annotation confidence Not enough data

Genome context

MDC014075.204: 25952-26102 [-]

Mature mdm-miR7126-5p

• Accession: MIMAT0026060
• Description: Malus domestica mdm-miR7126-5p mature miRNA
• Sequence: 22 - AAAGUAUCAAGGAGCGCAAAG - 42
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR7126-3p

• Accession: MIMAT0037475
• Description: Malus domestica mdm-miR7126-3p mature miRNA
• Sequence: 109 - UUGCGUUCCACUGAUUCUUUCG - 130
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47


2. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812