Stem-loop mdm-MIR171o

Accession

MI0023170

Description

Malus domestica mdm-MIR171o precursor miRNA

Literature search

9 open access papers mention mdm-MIR171o
(40 sentences)

Sequence

1986 reads, 208.0 reads per million, 32 experiments

UGGGAUGUUGGUAUGGUUCAAucaaauaaaaucucucaaaauuuggguccuuuaauuugaUUGAGCCGUGCCAAUAUCACa
...((((((((((((((((((((((((.(((...(((((...)))))...))).))))))))))))))))))))))))...

Structure

UGG                        a   ucu     a 
   GAUGUUGGUAUGGUUCAAucaaau aaa   cucaa  
   |||||||||||||||||||||||| |||   ||||| a
   CUAUAACCGUGCCGAGUUaguuua uuu   ggguu  
aCA                        a   ccu     u 

Annotation confidence Medium

Genome context

Unknown

Mature mdm-miR171o-5p

• Accession: MIMAT0026066
• Description: Malus domestica mdm-miR171o-5p mature miRNA
• Sequence: 1 - UGGGAUGUUGGUAUGGUUCAA - 21
• Evidence: experimental ; miRNAseq [1]

Mature mdm-miR171o-3p

• Accession: MIMAT0056733
• Description: Malus domestica mdm-miR171o-3p mature miRNA
• Sequence: 61 - UUGAGCCGUGCCAAUAUCAC - 80
• Evidence: experimental ; unknown

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47