miRBase entry: mdm-MIR858

Stem-loop mdm-MIR858


Accession
MI0023174
Description
Malus domestica mdm-MIR858 precursor miRNA

Literature search
6 open access papers mention mdm-MIR858
(71 sentences)

Sequence

18846 reads, 1906.0 reads per million, 32 experiments
caugcuaugcuugucaagugagcaguccuuugcaaauuaaucuuaguUUCGUUGUCUGUUCGACCUGAaacuacgguaaaggcuagguauauaguaccccugaaaacccuaauuagaaaguaaucauguuuuuuuauauagauuaaucaacuugauugaccaucuaacaaauuaaacaaggcagcuucguauuauagauaacuauauauugyguagcaucuugguauuugaccucguaaccuaaauuauagaguuacuuuaaugcauaaaagagucauuaaccuagaaagaagaaaguaaauuaaaacucccaaucuuaauccuguuuaugcauuuauuggauaauucauuuggaaagugguuuagguauaucuuuuggcuccuucuuuuccuuucgaaauaugaagaagaaagcaauugaaaaaauaguaauaggcuggmuauaaguuucuaaguaccccuuugcgguaaucuaacauaacuuugauagucguuggacuuuuacccuagguuuugcaguugcagcccgguaucgauuuuucagguguauauauguagguuacacacccaaauccaguccaaaaaguaggcagccuuaugcucwuuuuguuuuuaccaagacauauaaucaucuuuaauaucaaauaccugaacucacuguacuaauuaaauuggaugugaaaccaaucuaguuaccaauuuagauuaaguugcuuccacaaaagcauuuucuugcuuucgaacugcagaauaauuagcaugagccguauaaguacauccuuaauuagaaaaauaauguggcuaggagggaccgaguagugacuagcuagcuagccugcuaccauggaauguugauAGGUCGAACAGACAGCGAACCUGaaguacaagcaagagacuguucauuugacaaggguuugcaug
(((((.((.((((((((((((((((((.(((((......((.((((.((((((((((((((((((((.(((((.((((.(((((((.((..((((((..((.....((((..(((((..(((((((.(((...(((.......)))..))).))))).))..)))))(((((....(((((..(((.((...(((((....)))))...))...))).)))))..))))).....((((((((.....))).))))).(((((((........).))))))(((((.((((.(..(((........)))..)..))))..(((((.((((.((.....)).))))..))...))).((((((((((((((.((..(((.((.(((((((..............)))))))..)))))..))......((((..((((((..(((...........((((.......))))..(((.((......)).)))...(((((((..((((...(((..(((....)))))).))))..(((((....(((((.((.........)).))))).))))).)))))))...)))..))))))..)))).....((((((....)))))).....................)))))))))).))))...((((((((...(((((((.....(((((((........)))))))....(((((......)))))..(((.(((((((........))).....)))).))).........))))))))))))))).............)))))))))....))..)).))))..)).)))))))..)))).))....)))..)))))))))))))))))))).)))).))....))))).)))))))))))))))))).))..)))))

Structure
     -u  g                  c     aaauua  c    u                    -A   ----  c    -a       g  ua    -  cc  gaaaa    aauuagaaaguaaucauguuuuuuuauauagauuaaucaacuugauugaccaucuaacaaauuaaacaaggcagcuucguauuauagauaacuauauauugyguagcaucuugguauuugaccucguaaccuaaauuauagaguuacuuuaaugcauaaaagagucauuaa     ------------------------------------------------------------------------aaagaagaaaguaaauuaaaacucccaaucuuaauccuguuuaugcauuuauuggauaauucauuuggaa    -          aucuuuuggcuccuucuuuuccuuucgaaauaugaagaagaaagcaauugaaaaaau    au      gm   aaguuucuaaguaccccuuugcgguaaucuaacauaacuuugauagucg       -----------------------------------------uu  cccuagguuuug 
caugc  au cuugucaagugagcaguc uuugc      au uuag UUCGUUGUCUGUUCGACCUG  aac    ua ggua  aggcuag ua  uagu ac  cu     cccu                                                                                                                                                                           ccuag                                                                                                                                              agug guuuagguau                                                         agua  aggcug  uau                                                 uuggacu                                           ua            c
|||||  || |||||||||||||||||| |||||      || |||| ||||||||||||||||||||  |||    || ||||  ||||||| ||  |||| ||  ||     ||||                                                                                                                                                                           |||||                                                                                                                                              |||| ||||||||||                                                         ||||  ||||||  |||                                                 |||||||                                           ||             
guacg  ug gaacaguuuacuugucag gaacg      ug aGUC AAGCGACAGACAAGCUGGAu  uug    gu ccau  uccgauc au  auca ug  ga     ggga                                                                                                                                                                           ggauc                                                                                                                                              ucac caaguccaua                                                         ucgu  uccgac  aug                                                 aaccuga                                           au            a
     uu  g                  a     --aaca  a    C                    ag   uaag  a    cg       g  cg    g  au  -gcca    ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------     gguguaauaaaaagauuaauuccuacaugaauaugccgaguacgauuaauaagacgucaagcuuucguucuuuuacgaaaacaccuucguugaauuagauuuaaccauugaucuaaccaaaguguagguuaaauuaaucaug    u          ---------------aacuauaauuucuacuaauauacagaaccauuuuuguuuuwc    au      gg   ----------------------------------------------aaa       ccuaaacccacacauuggauguauauauguggacuuuuuagcu  ggcccgacguug 


Annotation confidence High
Do you think this miRNA is real?

Genome context
MDC007244.288: 7393-8313 [+]

Database links

Mature mdm-miR858-5p

Accession MIMAT0026070
Description Malus domestica mdm-miR858-5p mature miRNA
Sequence 48 - UUCGUUGUCUGUUCGACCUGA - 68
Evidence experimental
miRNAseq [1]

Mature mdm-miR858-3p

Accession MIMAT0056736
Description Malus domestica mdm-miR858-3p mature miRNA
Sequence 857 - AGGUCGAACAGACAGCGAACCUG - 879
Evidence experimental
unknown

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47