Stem-loop cme-MIR156d

Accession

MI0023215

Description

Cucumis melo cme-MIR156d precursor miRNA

Literature search

2 open access papers mention cme-MIR156d
(5 sentences)

Sequence

7547 reads, 3769.0 reads per million, 23 experiments

uggauaauuUGACAGAAGAGAGUGAGCACccagaggcaguugcuauaaaguguauaccaauacuuuugcguGCUCACUUCUCUCUCUGUCAGAuucguuaa
..(((((((((((((((((((((((((((.((((((..((((.((((.....)))).)))).)))))).)))))))).))))).))))))))))).)))..

Structure

ug   -           -     -        c      ca    c    a 
  gau aauuUGACAGA AGAGA GUGAGCAC cagagg  guug uaua a
  ||| ||||||||||| ||||| |||||||| ||||||  |||| |||| g
  uug uuAGACUGUCU UCUCU CACUCGug guuuuc  uaac auau u
aa   c           C     U        c      -a    c    g 

Annotation confidence High

Genome context

Unknown

Mature cme-miR156d-5p

• Accession: MIMAT0026111
• Description: Cucumis melo cme-miR156d-5p mature miRNA
• Sequence: 10 - UGACAGAAGAGAGUGAGCAC - 29
• Evidence: not_experimental

Mature cme-miR156d-3p

• Accession: MIMAT0057863
• Description: Cucumis melo cme-miR156d-3p mature miRNA
• Sequence: 72 - GCUCACUUCUCUCUCUGUCAGA - 93
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877