Stem-loop cme-MIR156c

Accession

MI0023225

Description

Cucumis melo cme-MIR156c precursor miRNA

Literature search

2 open access papers mention cme-MIR156c
(5 sentences)

Sequence

12279 reads, 5225.0 reads per million, 25 experiments

gggcaggagagUGACAGAAGAGAGUGAGCACacgcugcagccaaauguaugaaaggcauaccuuugcgggugcgUGCUCACUUCUCUUUCUGUCAGcuuccccgu
(((..((((..((((((((((((((((((((.((((...((.(((.(((((.....))))).))))).)))).)))))))).)))).)))))))).)))))))..

Structure

--   ca    ag        -    -        a    gca  c   u     a 
  ggg  ggag  UGACAGAA GAGA GUGAGCAC cgcu   gc aaa guaug a
  |||  ||||  |||||||| |||| |||||||| ||||   || ||| ||||| a
  ccc  cuuc  ACUGUCUU CUCU CACUCGUg gugg   cg uuu cauac g
ug   --    -G        U    U        c    --g  -   c     g 

Annotation confidence High

Genome context

Unknown

Mature cme-miR156c-5p

• Accession: MIMAT0026121
• Description: Cucumis melo cme-miR156c-5p mature miRNA
• Sequence: 12 - UGACAGAAGAGAGUGAGCAC - 31
• Evidence: not_experimental

Mature cme-miR156c-3p

• Accession: MIMAT0057866
• Description: Cucumis melo cme-miR156c-3p mature miRNA
• Sequence: 75 - UGCUCACUUCUCUUUCUGUCAG - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877