Stem-loop cme-MIR319b

Accession

MI0023232

Description

Cucumis melo cme-MIR319b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

2 open access papers mention cme-MIR319b
(3 sentences)

Sequence

acaagggagcucucuucaguccaguccaagucaguuuucucgguuguuacuuagcugcugacucguuggcucaauaacugaucaacugauauauaagcuugaacaaugauguguuuuugaaccaacgaugcaggagccaaguucagccauggcugucacgucUUGGACUGAAGGGAGCUCCCucaccuuccac
...(((((((((((((((((((((.....(.(((((.....(((((..((((.(((.(((..(((((((.((((.(((((.((((((........)).)))).)).......))).)))).)))))))..))).))).)))).)))))..))))).).....)))))))))))))))))))))..........

Structure

-------aca                     uccaa u     uucuc     uu    a   g   ac       c    u   -------  a    -  gau 
          agggagcucucuucaguccag     g caguu     gguug  acuu gcu cug  ucguugg ucaa aac       ug ucaa cu   a
          |||||||||||||||||||||     | |||||     |||||  |||| ||| |||  ||||||| |||| |||       || |||| ||    
          uCCCUCGAGGGAAGUCAGGUU     c gucgg     ccgac  ugaa cga gac  agcaacc aguu uug       ac aguu ga   u
caccuuccac                     cugca u     ---ua     -u    c   g   gu       a    u   uguagua  a    c  aua 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR319b

• Accession: MIMAT0026128
• Description: Cucumis melo cme-miR319b mature miRNA
• Sequence: 163 - UUGGACUGAAGGGAGCUCCC - 182
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877