Stem-loop cme-MIR319a

Accession

MI0023233

Description

Cucumis melo cme-MIR319a precursor miRNA

Literature search

2 open access papers mention cme-MIR319a
(3 sentences)

Sequence

31067 reads, 23663.0 reads per million, 26 experiments

uuaagagagcuuucuucaguccacucauggguggcgguaggguuuaauuAGCUGCCGACUCAUUCAUUCAaauauugaguccaaaaauuucaaaucucaaauggauucacuaaacgauugaaugaugcgggagacaaauugaaucuuaagcuuccuguacUUGGACUGAAGGGAGCUCCCuuuucuuuc
..(((.(((((((((((((((((...(((((.(((..((((((((((((.(((.(((..(((((((.((...((.((((((((..................)))))))).))...)).)))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).))).......

Structure

-----uu   a                 cuc     u   gg            A -  G   AC       U  Aaa  u        aaaauuuc 
       aag gagcuuucuucagucca   auggg ggc  uaggguuuaauu G CU CCG  UCAUUCA UC   ua ugagucca        a
       ||| |||||||||||||||||   ||||| |||  |||||||||||| | || |||  ||||||| ||   || ||||||||         
       uuC CUCGAGGGAAGUCAGGU   ugucc ucg  auucuaaguuaa c ga ggc  aguaagu ag   au acuuaggu        a
cuuucuu   C                 Uca     u   -a            a a  g   gu       u  caa  c        aaacucua 

Annotation confidence Low

Genome context

Unknown

Mature cme-miR319a-5p

• Accession: MIMAT0057870
• Description: Cucumis melo cme-miR319a-5p mature miRNA
• Sequence: 50 - AGCUGCCGACUCAUUCAUUCA - 70
• Evidence: experimental ; unknown

Mature cme-miR319a-3p

• Accession: MIMAT0026129
• Description: Cucumis melo cme-miR319a-3p mature miRNA
• Sequence: 161 - UUGGACUGAAGGGAGCUCCC - 180
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877