miRBase entry: cme-MIR395f

Stem-loop cme-MIR395f


Accession
MI0023248
Description
Cucumis melo cme-MIR395f precursor miRNA


Sequence

1770 reads, 866.0 reads per million, 23 experiments
ucuugAGUUCCCUUCCAAACACUUCAGAAgaaacaacaaccauagcuaauaucacaaauuaaaacuuuaugagaugcaacuuucagCUGAAGUGUUUGGGGGAACUCuggaagaua
(((.((((((((..(((((((((((((..((((...((.((((((.....................))))).).))....))))..))))))))))))))))))))).))).....

Structure
-----   u        UU             AA    -caa  a -     cuaauauca 
     ucu gAGUUCCC  CCAAACACUUCAG  gaaa    ca c cauag         c
     ||| ||||||||  |||||||||||||  ||||    || | |||||         a
     agg CUCAAGGG  GGUUUGUGAAGUC  cuuu    gu g guauu         a
auaga   u        --             ga    caac  a a     ucaaaauua 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR395f-5p

Accession MIMAT0057883
Description Cucumis melo cme-miR395f-5p mature miRNA
Sequence 6 - AGUUCCCUUCCAAACACUUCAGAA - 29
Evidence experimental
unknown

Mature cme-miR395f-3p

Accession MIMAT0026144
Description Cucumis melo cme-miR395f-3p mature miRNA
Sequence 87 - CUGAAGUGUUUGGGGGAACUC - 107
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877