Stem-loop ccr-let-7a

Accession

MI0023297

Description

Cyprinus carpio ccr-let-7a precursor miRNA

Literature search

7 open access papers mention ccr-let-7a
(47 sentences)

Sequence

3568496 reads, 14178.0 reads per million, 33 experiments

uguuucgggaUGAGGUAGUAGGUUGUAUAGUUuagaguuacaacaugggagauaaCUGUACAGCCUCCUAGCUUUCCccga
....(((((..(((.(((.(((((((((((((.....................))))))))))))).))).)))..)))))

Structure

uguu     aU   G   U             uagaguuac 
    ucggg  GAG UAG AGGUUGUAUAGUU         a
    |||||  ||| ||| |||||||||||||         a
    agccC  UUC AUC UCCGACAUGUCaa         c
----     CU   G   C             uagagggua 

Annotation confidence High

Genome context

Unknown

Mature ccr-let-7a-5p

• Accession: MIMAT0026189
• Description: Cyprinus carpio ccr-let-7a-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUAUAGUU - 32
• Evidence: experimental ; Illumina [1]

Mature ccr-let-7a-3p

• Accession: MIMAT0058249
• Description: Cyprinus carpio ccr-let-7a-3p mature miRNA
• Sequence: 56 - CUGUACAGCCUCCUAGCUUUCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925