Stem-loop ccr-let-7i

Accession

MI0023300

Description

Cyprinus carpio ccr-let-7i precursor miRNA

Literature search

5 open access papers mention ccr-let-7i
(27 sentences)

Sequence

455453 reads, 2098.0 reads per million, 33 experiments

uuuagccguguacuggcUGAGGUAGUAGUUUGUGCUGUugguugggaugugacauugcccguuauggagaugaCUGCGCAAGCUACUCCCUUGCcagugcugguuacacucu
..((((((.((((((((.((((.((((((((((((.((..(((....((((((.......))))))..))).)).)))))))))))).))))))))))))))))))......

Structure

----uu      u        U    U            U  ug   ggga      au 
      uagccg guacuggc GAGG AGUAGUUUGUGC GU  guu    ugugac  u
      |||||| |||||||| |||| |||||||||||| ||  |||    ||||||  g
      auuggu cgugacCG UUCC UCAUCGAACGCG Ca  uag    guauug  c
ucucac      -        -    C            U  -g   --ag      cc 

Annotation confidence High

Genome context

Unknown

Mature ccr-let-7i-5p

• Accession: MIMAT0026192
• Description: Cyprinus carpio ccr-let-7i-5p mature miRNA
• Sequence: 18 - UGAGGUAGUAGUUUGUGCUGU - 38
• Evidence: experimental ; Illumina [1]

Mature ccr-let-7i-3p

• Accession: MIMAT0058252
• Description: Cyprinus carpio ccr-let-7i-3p mature miRNA
• Sequence: 74 - CUGCGCAAGCUACUCCCUUGC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925