Stem-loop ccr-mir-100

Accession

MI0023303

Description

Cyprinus carpio ccr-mir-100 precursor miRNA

Literature search

2 open access papers mention ccr-mir-100
(2 sentences)

Sequence

5855165 reads, 24839.0 reads per million, 33 experiments

ccugccugcugacacaAACCCGUAGAUCCGAACUUGUggugacuguccacaCAAGCUUGUAUCUAUAGGUAUCUGucuguguggca
..(((((((.((((...(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...)))).))).))))

Structure

cc    -   u    caA   C      C   A      g  ac 
  ugcc ugc gaca   ACC GUAGAU CGA CUUGUg ug  u
  |||| ||| ||||   ||| |||||| ||| |||||| ||   
  acgg gug cuGU   UGG UAUCUA GUU GAACac ac  g
--    u   u    CUA   A      U   C      -  cu 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-100-5p

• Accession: MIMAT0026195
• Description: Cyprinus carpio ccr-miR-100-5p mature miRNA
• Sequence: 17 - AACCCGUAGAUCCGAACUUGU - 37
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-100-3p

• Accession: MIMAT0058255
• Description: Cyprinus carpio ccr-miR-100-3p mature miRNA
• Sequence: 52 - CAAGCUUGUAUCUAUAGGUAUCUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925