Stem-loop ccr-mir-130b

Accession

MI0023318

Description

Cyprinus carpio ccr-mir-130b precursor miRNA

Literature search

1 open access papers mention ccr-mir-130b
(2 sentences)

Sequence

557782 reads, 3017.0 reads per million, 33 experiments

guuugucuguugccugacACUCUUUCCCUGUUGCACUACUgugggagcugcagcuagCAGUGCAAUAAUGAAAGGGCAUcaguccacuggaccagac
((((((((((.(.((((..(((((((..(((((((((.((((((...)))))).....)))))))))..)))))))..)))).).)).))).)))))

Structure

     -   -  u c    cA       CC         ----A      g 
guuug ucu gu g cuga  CUCUUUC  UGUUGCACU     CUgugg  
||||| ||| || | ||||  |||||||  |||||||||     |||||| a
cagac agg ca c gacU  GGGAAAG  AUAACGUGA     gacguc  
     c   u  c u    AC       UA         Cgauc      g 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-130b-5p

• Accession: MIMAT0058268
• Description: Cyprinus carpio ccr-miR-130b-5p mature miRNA
• Sequence: 19 - ACUCUUUCCCUGUUGCACUACU - 40
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-130b-3p

• Accession: MIMAT0026211
• Description: Cyprinus carpio ccr-miR-130b-3p mature miRNA
• Sequence: 58 - CAGUGCAAUAAUGAAAGGGCAU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925