Stem-loop ccr-mir-130c

Accession

MI0023319

Description

Cyprinus carpio ccr-mir-130c precursor miRNA

Literature search

1 open access papers mention ccr-mir-130c
(2 sentences)

Sequence

595202 reads, 2378.0 reads per million, 33 experiments

uacuguuguuguccaggGCCCUUUUUCUGUUGUACUACUgugcagucagaugagCAGUGCAAUAUUAAAAGGGCAUuggcugacaa
.....((((((.((((.((((((((..((((((...(((((.((......)).)))))))))))..)))))))).)))).))))))

Structure

uacug      u    g        UC      ACU     g  gu 
     uuguug ccag GCCCUUUU  UGUUGU   ACUgu ca  c
     |||||| |||| ||||||||  ||||||   ||||| ||   
     aacagu gguU CGGGAAAA  AUAACG   UGACg gu  a
-----      c    A        UU      ---     a  ag 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-130c-5p

• Accession: MIMAT0058269
• Description: Cyprinus carpio ccr-miR-130c-5p mature miRNA
• Sequence: 18 - GCCCUUUUUCUGUUGUACUACU - 39
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-130c-3p

• Accession: MIMAT0026212
• Description: Cyprinus carpio ccr-miR-130c-3p mature miRNA
• Sequence: 55 - CAGUGCAAUAUUAAAAGGGCAU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925