Stem-loop ccr-mir-133a

Accession

MI0023321

Description

Cyprinus carpio ccr-mir-133a precursor miRNA

Literature search

3 open access papers mention ccr-mir-133a
(12 sentences)

Sequence

167169 reads, 871.0 reads per million, 33 experiments

cacaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUcaccucuucaauggaUUUGGUCCCCUUCAACCAGCUguagcuaugcuuugaug
..(((.((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)).)))...

Structure

-ca   u  uuu    a       AA  U  A        accuc 
   caa gc   gcua AGCUGGU  AA GG ACCAAAUc     u
   ||| ||   |||| |||||||  || || ||||||||      
   guu cg   cgau UCGACCA  UU CC UGGUUUag     u
gua   u  uau    g       AC  C  C        guaac 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-133a-5p

• Accession: MIMAT0026214
• Description: Cyprinus carpio ccr-miR-133a-5p mature miRNA
• Sequence: 17 - AGCUGGUAAAAUGGAACCAAAU - 38
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-133a-3p

• Accession: MIMAT0026215
• Description: Cyprinus carpio ccr-miR-133a-3p mature miRNA
• Sequence: 54 - UUUGGUCCCCUUCAACCAGCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925