Stem-loop ccr-mir-138

Accession

MI0023324

Description

Cyprinus carpio ccr-mir-138 precursor miRNA

Literature search

1 open access papers mention ccr-mir-138
(4 sentences)

Sequence

6806 reads, 39.0 reads per million, 24 experiments

ggugugugugcugcAGCUGGUGUUGUGAAUCAGGCcgaugucacacguccgcgauaacccgGCUAUUUCACAACACCAGGGUggcaccacacc
((((((.(((((((..(((((((((((((...(((((.((((.(......).))))...)))))..))))))))))))).)))))))))))))

Structure

      u       AG             UCA     --a    a ac 
ggugug gugcugc  CUGGUGUUGUGAA   GGCcg   uguc c  g
|||||| |||||||  |||||||||||||   |||||   |||| |   
ccacac cacggUG  GACCACAACACUU   UCGgc   auag g  u
      -       -G             -UA     cca    c cc 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-138-5p

• Accession: MIMAT0026218
• Description: Cyprinus carpio ccr-miR-138-5p mature miRNA
• Sequence: 15 - AGCUGGUGUUGUGAAUCAGGC - 35
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-138-3p

• Accession: MIMAT0058272
• Description: Cyprinus carpio ccr-miR-138-3p mature miRNA
• Sequence: 62 - GCUAUUUCACAACACCAGGGU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925