Stem-loop ccr-mir-143

Accession

MI0023329

Description

Cyprinus carpio ccr-mir-143 precursor miRNA

Literature search

3 open access papers mention ccr-mir-143
(10 sentences)

Sequence

6868072 reads, 28006.0 reads per million, 33 experiments

guccucaggcccaaGGUGCAGUGCUGCAUCUCUGGUcaacugggagucUGAGAUGAAGCACUGUAGCUcgggaggaagggca
(((((....(((.((.(((((((((.((((((.((((......)).)).)))))).))))))))).)).)))....))))).

Structure

-     cagg   a  G         G      U  -  aa 
 guccu    ccc aG UGCAGUGCU CAUCUC GG Uc  c
 |||||    ||| || ||||||||| |||||| || ||   
 cggga    ggg UC AUGUCACGA GUAGAG cu ag  u
a     agga   c  G         A      U  g  gg 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-143-5p

• Accession: MIMAT0058274
• Description: Cyprinus carpio ccr-miR-143-5p mature miRNA
• Sequence: 15 - GGUGCAGUGCUGCAUCUCUGGU - 36
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-143-3p

• Accession: MIMAT0026224
• Description: Cyprinus carpio ccr-miR-143-3p mature miRNA
• Sequence: 49 - UGAGAUGAAGCACUGUAGCU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925