Stem-loop ccr-mir-144

Accession

MI0023330

Description

Cyprinus carpio ccr-mir-144 precursor miRNA

Literature search

1 open access papers mention ccr-mir-144
(1 sentences)

Sequence

669531 reads, 2554.0 reads per million, 33 experiments

cggucuuguccucuagacaGGAUAUCAUCGUAUACUGUAAGUUcauuauugagacaCUACAGUAUAGAUGAUGUACUauccagggggucaauacacc
.(((.(((((((((.((.((.((((((((.(((((((((..((((....))))....))))))))))))))))).)).)).)))))).)))...)))

Structure

c   --c   -      a  c  G        G         --AG    u 
 ggu   uug uccucu ga aG AUAUCAUC UAUACUGUA    UUca u
 |||   ||| |||||| || || |||||||| |||||||||    ||||  
 cca   aac ggggga cu UC UGUAGUAG AUAUGACAU    gagu a
-   cau   u      c  a  A        -         Caca    u 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-144-5p

• Accession: MIMAT0058275
• Description: Cyprinus carpio ccr-miR-144-5p mature miRNA
• Sequence: 20 - GGAUAUCAUCGUAUACUGUAAGUU - 43
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-144-3p

• Accession: MIMAT0026225
• Description: Cyprinus carpio ccr-miR-144-3p mature miRNA
• Sequence: 57 - CUACAGUAUAGAUGAUGUACU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925