Stem-loop ccr-mir-146a

Accession

MI0023331

Description

Cyprinus carpio ccr-mir-146a precursor miRNA

Literature search

4 open access papers mention ccr-mir-146a
(8 sentences)

Sequence

5010049 reads, 19559.0 reads per million, 33 experiments

agcacuuaagcccUGAGAACUGAAUUCCAUAGAUGGuguucauaaagaguucAUCUAUGGGCUCAGUUCUUCUggcauugugu
.((((....(((..(((((((((..(((((((((((..(((.....))).))))))))))).)))))))))..)))...))))

Structure

a    uuaa   cU         AU           ug   a 
 gcac    gcc  GAGAACUGA  UCCAUAGAUGG  uuc u
 ||||    |||  |||||||||  |||||||||||  ||| a
 ugug    cgg  UUCUUGACU  GGGUAUCUAcu  gag a
-    -uua   UC         -C           -u   a 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-146a-5p

• Accession: MIMAT0026226
• Description: Cyprinus carpio ccr-miR-146a-5p mature miRNA
• Sequence: 14 - UGAGAACUGAAUUCCAUAGAUGG - 36
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-146a-3p

• Accession: MIMAT0058276
• Description: Cyprinus carpio ccr-miR-146a-3p mature miRNA
• Sequence: 53 - AUCUAUGGGCUCAGUUCUUCU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925