Stem-loop ccr-mir-16a

Accession

MI0023339

Description

Cyprinus carpio ccr-mir-16a precursor miRNA

Literature search

1 open access papers mention ccr-mir-16a
(1 sentences)

Sequence

90166 reads, 662.0 reads per million, 33 experiments

acucuaccucccucgcuuUAGCAGCACGUAAAUAUUGGUGuguuaaagucaaggccagccCCAAUAUUGUGUGUGCUGCUUcagugaggcagg
......(((.(((((((..(((((((((..((((((((.(((((........)))..)).))))))))...)))))))))..))))))).)))

Structure

acucua   c       uU         -UA        U  --   aaa 
      ccu ccucgcu  AGCAGCACG   AAUAUUGG Gu  guu   g
      ||| |||||||  |||||||||   |||||||| ||  |||    
      gga ggaguga  UCGUCGUGU   UUAUAACC cg  cgg   u
------   c       cU         GUG        c  ac   aac 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-16a-5p

• Accession: MIMAT0026233
• Description: Cyprinus carpio ccr-miR-16a-5p mature miRNA
• Sequence: 19 - UAGCAGCACGUAAAUAUUGGUG - 40
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-16a-3p

• Accession: MIMAT0058283
• Description: Cyprinus carpio ccr-miR-16a-3p mature miRNA
• Sequence: 61 - CCAAUAUUGUGUGUGCUGCUU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925