Stem-loop ccr-mir-181c

Accession

MI0023345

Description

Cyprinus carpio ccr-mir-181c precursor miRNA

Literature search

2 open access papers mention ccr-mir-181c
(7 sentences)

Sequence

133549 reads, 813.0 reads per million, 33 experiments

cuggguccugauuCACAUUCAUUGCUGUCGGUGGGuuuuaucucuucgaCUCGCCGGACAAUGAAUGAGAAcuauggccc
..(((((.((.(((.(((((((((...((((((((((..........)))))))))).))))))))).))).)).)))))

Structure

cu     c  a   A         CUG          uuau 
  ggguc ug uuC CAUUCAUUG   UCGGUGGGuu    c
  ||||| || ||| |||||||||   ||||||||||     
  cccgg au AAG GUAAGUAAC   GGCCGCUCag    u
--     u  c   A         --A          cuuc 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-181c-5p

• Accession: MIMAT0026240
• Description: Cyprinus carpio ccr-miR-181c-5p mature miRNA
• Sequence: 14 - CACAUUCAUUGCUGUCGGUGGG - 35
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-181c-3p

• Accession: MIMAT0058288
• Description: Cyprinus carpio ccr-miR-181c-3p mature miRNA
• Sequence: 50 - CUCGCCGGACAAUGAAUGAGAA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925