Stem-loop ccr-mir-184

Accession

MI0023348

Description

Cyprinus carpio ccr-mir-184 precursor miRNA

Literature search

2 open access papers mention ccr-mir-184
(12 sentences)

Sequence

499605 reads, 3413.0 reads per million, 33 experiments

ggugagacuaggaauucagucgaccacaucuCCUUAUCACUUUUCCAGCCCAGCUauccauuuaguauccguUGGACGGAGAACUGAUAAGGGCaugugcccgauacucccuccugguccauc
((((.((((((((.....((((..(((((.(((((((((.((((((.(.(((((................))))).))))))).))))))))).)))))..))))......))))))))))))

Structure

    a        -auuca    ac     c         C      A C     Uauccau 
ggug gacuagga      gucg  cacau uCCUUAUCA UUUUCC G CCAGC       u
|||| ||||||||      ||||  ||||| ||||||||| |||||| | |||||        
cuac cugguccu      uagc  gugua GGGAAUAGU AAGAGG C GGUug       u
    -        cccuca    cc     C         C      - A     ccuauga 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-184-5p

• Accession: MIMAT0058290
• Description: Cyprinus carpio ccr-miR-184-5p mature miRNA
• Sequence: 32 - CCUUAUCACUUUUCCAGCCCAGCU - 55
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-184-3p

• Accession: MIMAT0026244
• Description: Cyprinus carpio ccr-miR-184-3p mature miRNA
• Sequence: 73 - UGGACGGAGAACUGAUAAGGGC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925