Stem-loop ccr-mir-190

Accession

MI0023353

Description

Cyprinus carpio ccr-mir-190 precursor miRNA

Literature search

1 open access papers mention ccr-mir-190
(1 sentences)

Sequence

4859 reads, 25.0 reads per million, 27 experiments

accuggaagccuuucugcagggcucuguuUGAUAUGUUUGAUAUAUUAGGuuguuauucuguccaaCUAUAUAUCAAACAUAUUCCUacaguguccugcucugucuccagacuugu
..(((((.((......(((((((.((((..((((((((((((((((..(((((..........)))))))))))))))))))))...)))).)))))))...)).)))))......

Structure

----ac     a  cuuucu       u    -uU                UA     uuau 
      cugga gc      gcagggc cugu   GAUAUGUUUGAUAUAU  GGuug    u
      ||||| ||      ||||||| ||||   ||||||||||||||||  |||||     
      gaccu ug      cguccug gaca   UUAUACAAACUAUAUA  UCaac    c
uguuca     c  ---ucu       u    UCC                --     cugu 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-190-5p

• Accession: MIMAT0026249
• Description: Cyprinus carpio ccr-miR-190-5p mature miRNA
• Sequence: 30 - UGAUAUGUUUGAUAUAUUAGG - 50
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-190-3p

• Accession: MIMAT0058295
• Description: Cyprinus carpio ccr-miR-190-3p mature miRNA
• Sequence: 67 - CUAUAUAUCAAACAUAUUCCU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925