Stem-loop ccr-mir-192

Accession

MI0023354

Description

Cyprinus carpio ccr-mir-192 precursor miRNA

Literature search

3 open access papers mention ccr-mir-192
(3 sentences)

Sequence

23831039 reads, 83080.0 reads per million, 33 experiments

cccagugucuaggacacagggugAUGACCUAUGAAUUGACAGCCaguguuugcaguccagcugCCUGUCAGUUCUGUAGGCCACUguccuguuuauccuacuaaacacacacugauuugc
..((((((.(((((.((((((...((.(((((((((((((((.((((............)))).)))))))))).))))).))...))))))...)))))........))))))......

Structure

----cc      -------c     --c      ugA  A     -          C    guuug 
      cagugu        uagga   acaggg   UG CCUAU GAAUUGACAG Cagu     c
      ||||||        |||||   ||||||   || ||||| |||||||||| ||||      
      gucaca        auccu   uguccu   AC GGAUG CUUGACUGUC gucg     a
cguuua      cacaaauc     auu      gUC  C     U          C    accug 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-192-5p

• Accession: MIMAT0026250
• Description: Cyprinus carpio ccr-miR-192-5p mature miRNA
• Sequence: 24 - AUGACCUAUGAAUUGACAGCC - 44
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-192-3p

• Accession: MIMAT0058296
• Description: Cyprinus carpio ccr-miR-192-3p mature miRNA
• Sequence: 64 - CCUGUCAGUUCUGUAGGCCACU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925