Stem-loop ccr-mir-194

Accession

MI0023356

Description

Cyprinus carpio ccr-mir-194 precursor miRNA

Sequence

1173221 reads, 4564.0 reads per million, 33 experiments

aaauauuuggugcugacugguUGUAACAGCAACUCCAUGUGGAagguuucuuaugucuuCCAGUGGAGCUGCUGUUGCGUGcagauagucacccuuaucua
........(((((((.(((..((((((((((.((((((.(((((((.........))))))))))))).))))))))))..))).))).))))........

Structure

aaauauuu    -   a   gu          A      G       uuu 
        ggug cug cug  UGUAACAGCA CUCCAU UGGAagg   c
        |||| ||| |||  |||||||||| |||||| |||||||   u
        ccac gau gac  GCGUUGUCGU GAGGUG ACCuucu   u
aucuauuc    u   a   GU          C      -       gua 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-194-5p

• Accession: MIMAT0026252
• Description: Cyprinus carpio ccr-miR-194-5p mature miRNA
• Sequence: 22 - UGUAACAGCAACUCCAUGUGGA - 43
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-194-3p

• Accession: MIMAT0058298
• Description: Cyprinus carpio ccr-miR-194-3p mature miRNA
• Sequence: 60 - CCAGUGGAGCUGCUGUUGCGUG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925