Stem-loop ccr-mir-196a

Accession

MI0023357

Description

Cyprinus carpio ccr-mir-196a precursor miRNA

Literature search

2 open access papers mention ccr-mir-196a
(7 sentences)

Sequence

31688 reads, 319.0 reads per million, 33 experiments

uggugcgugguuUAGGUAGUUUCAUGUUGUUGGGauuggcuucuuggcuCGACAACAAGAAACUGCCUUGAUuacgucaguuc
....((((((((.((((((((((.((((((((((...((...))...)))))))))).)))))))))).))))))))......

Structure

--uggu        U          A          auu  c 
      gcgugguu AGGUAGUUUC UGUUGUUGGG   gg  
      |||||||| |||||||||| ||||||||||   || u
      ugcauUAG UCCGUCAAAG ACAACAGCuc   uc  
cuugac        U          A          ggu  u 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-196a-5p

• Accession: MIMAT0026253
• Description: Cyprinus carpio ccr-miR-196a-5p mature miRNA
• Sequence: 13 - UAGGUAGUUUCAUGUUGUUGGG - 34
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-196a-3p

• Accession: MIMAT0058299
• Description: Cyprinus carpio ccr-miR-196a-3p mature miRNA
• Sequence: 50 - CGACAACAAGAAACUGCCUUGAU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925