Stem-loop ccr-mir-21

Accession

MI0023368

Description

Cyprinus carpio ccr-mir-21 precursor miRNA

Literature search

4 open access papers mention ccr-mir-21
(20 sentences)

Sequence

6059366 reads, 25365.0 reads per million, 33 experiments

ucccauucugucaggUAGCUUAUCAGACUGGUGUUGGCuguaagucauauggCAACAUCAGUCUAAUAGGCUGccugaaauuuugggcuu
.((((.....(((((((((((((.((((((((((((.(((((.....))))))))))))))))).))))))))))))).....))))...

Structure

--u    uucug             C            G     a 
   ccca     ucaggUAGCUUAU AGACUGGUGUUG Cugua g
   ||||     ||||||||||||| |||||||||||| ||||| u
   gggu     aguccGUCGGAUA UCUGACUACAAC gguau c
uuc    uuuaa             A            -     a 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-21-5p

• Accession: MIMAT0026267
• Description: Cyprinus carpio ccr-miR-21-5p mature miRNA
• Sequence: 16 - UAGCUUAUCAGACUGGUGUUGGC - 38
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-21-3p

• Accession: MIMAT0058307
• Description: Cyprinus carpio ccr-miR-21-3p mature miRNA
• Sequence: 53 - CAACAUCAGUCUAAUAGGCUG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925