Stem-loop ccr-mir-218a

Accession

MI0023372

Description

Cyprinus carpio ccr-mir-218a precursor miRNA

Sequence

24527 reads, 135.0 reads per million, 33 experiments

ggugcagcugucucUUGUGCUUGAUCUAACCAUGUGccgccgccuacacaagccUCACAUGGUUCCGUCAAGCACCagggaccgcuggac
.((.((((.((((((.(((((((((..(((((((((..((...........))..)))))))))..))))))))).)))))).)))).))

Structure

g  g    u      U         CU         cc  cgcc 
 gu cagc gucucU GUGCUUGAU  AACCAUGUG  gc    u
 || |||| |||||| |||||||||  |||||||||  ||    a
 ca gucg caggga CACGAACUG  UUGGUACAC  cg    c
-  g    c      C         CC         Uc  aaca 

Annotation confidence Medium

Genome context

Unknown

Mature ccr-miR-218a-5p

• Accession: MIMAT0026271
• Description: Cyprinus carpio ccr-miR-218a-5p mature miRNA
• Sequence: 15 - UUGUGCUUGAUCUAACCAUGUG - 36
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-218a-3p

• Accession: MIMAT0058311
• Description: Cyprinus carpio ccr-miR-218a-3p mature miRNA
• Sequence: 55 - UCACAUGGUUCCGUCAAGCACC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925