Stem-loop ccr-mir-221

Accession

MI0023374

Description

Cyprinus carpio ccr-mir-221 precursor miRNA

Literature search

1 open access papers mention ccr-mir-221
(2 sentences)

Sequence

202186 reads, 882.0 reads per million, 33 experiments

aaagcaagacugaugugguuuugaACCUGGCAUACAGUGUAGAGAUCUGUguuugucaaauuacAGCUACAUUGUCUGCUGGGUUUCagagccgcuucauaacgccgga
...((.....(((.((((((((((((((((((.(((((((((....(((((.((....)).)))))))))))))).))))))).))))))))))).)))....))....

Structure

-aaa  aagac   u           -       U         AGAU     u  g 
    gc     uga gugguuuugaA CCUGGCA ACAGUGUAG    CUGUg uu u
    ||     ||| ||||||||||| ||||||| |||||||||    ||||| ||  
    cg     acu cgccgagaCUU GGGUCGU UGUUACAUC    GAcau aa c
aggc  -caau   u           U       C         ----     u  a 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-221-5p

• Accession: MIMAT0058313
• Description: Cyprinus carpio ccr-miR-221-5p mature miRNA
• Sequence: 25 - ACCUGGCAUACAGUGUAGAGAUCUGU - 50
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-221-3p

• Accession: MIMAT0026273
• Description: Cyprinus carpio ccr-miR-221-3p mature miRNA
• Sequence: 65 - AGCUACAUUGUCUGCUGGGUUUC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925