Stem-loop ccr-mir-222

Accession

MI0023375

Description

Cyprinus carpio ccr-mir-222 precursor miRNA

Literature search

1 open access papers mention ccr-mir-222
(6 sentences)

Sequence

669064 reads, 4059.0 reads per million, 33 experiments

gacguccauccuuCGCUCAGUGGUCAGUGUAGGUCCUGucuccgccagcAGCUACAUCUGGCUACUGGGucucugauggccguc
((((.(((((....((((((((((((((((((.(.(((.......))).).))))).)))))))))))))....))))).))))

Structure

    u     cuuC             -     G C   uc 
gacg ccauc    GCUCAGUGGUCAG UGUAG U CUG  u
|||| |||||    ||||||||||||| ||||| | |||  c
cugc gguag    uGGGUCAUCGGUC ACAUC A gac  c
    c     ucuc             U     G c   cg 

Annotation confidence Medium

Genome context

Unknown

Mature ccr-miR-222-5p

• Accession: MIMAT0058314
• Description: Cyprinus carpio ccr-miR-222-5p mature miRNA
• Sequence: 14 - CGCUCAGUGGUCAGUGUAGGUCCUG - 38
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-222-3p

• Accession: MIMAT0026274
• Description: Cyprinus carpio ccr-miR-222-3p mature miRNA
• Sequence: 50 - AGCUACAUCUGGCUACUGGG - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925