Stem-loop ccr-mir-22a

Accession

MI0023376

Description

Cyprinus carpio ccr-mir-22a precursor miRNA

Literature search

5 open access papers mention ccr-mir-22a
(10 sentences)

Sequence

6717373 reads, 27212.0 reads per million, 33 experiments

agugaauauuggcugaccuaccgcAGUUCUUCUCUGGCAAACUUUaugacccuguccugacgcuaAAGCUGCCAGCUGAAGAACUGUuguggucagcucu
..........((((((((.((.((((((((((.((((((..(((((.(...(......)...)))))).))))))..)))))))))).))))))))))..

Structure

agugaauauu        u  c          -U      AA     u acc ug 
          ggcugacc ac gcAGUUCUUC  CUGGCA  CUUUa g   c  u
          |||||||| || ||||||||||  ||||||  ||||| |   |   
          ucgacugg ug UGUCAAGAAG  GACCGU  GAAau c   g  c
--------uc        -  u          UC      -C     - gca uc 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-22a-5p

• Accession: MIMAT0058315
• Description: Cyprinus carpio ccr-miR-22a-5p mature miRNA
• Sequence: 25 - AGUUCUUCUCUGGCAAACUUU - 45
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-22a-3p

• Accession: MIMAT0026275
• Description: Cyprinus carpio ccr-miR-22a-3p mature miRNA
• Sequence: 66 - AAGCUGCCAGCUGAAGAACUGU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925