Stem-loop ccr-mir-27a

Accession

MI0023383

Description

Cyprinus carpio ccr-mir-27a precursor miRNA

Literature search

3 open access papers mention ccr-mir-27a
(17 sentences)

Sequence

385763 reads, 2006.0 reads per million, 33 experiments

gaggugcAGGACUUAGCUCUCUCUGUGAACAgaucucggauauccuaugUUCACAGUGGCUAAGUUCCGCuccuc
((((.((.((((((((((....(((((((((......((....))..))))))))).)))))))))).)).))))

Structure

    u  A          CUCU         gaucuc  a 
gagg gc GGACUUAGCU    CUGUGAACA      gg u
|||| || ||||||||||    |||||||||      ||  
cucc CG CUUGAAUCGG    GACACUUgu      cc a
    u  C          ---U         ----au  u 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-27a-5p

• Accession: MIMAT0058322
• Description: Cyprinus carpio ccr-miR-27a-5p mature miRNA
• Sequence: 8 - AGGACUUAGCUCUCUCUGUGAACA - 31
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-27a-3p

• Accession: MIMAT0026282
• Description: Cyprinus carpio ccr-miR-27a-3p mature miRNA
• Sequence: 50 - UUCACAGUGGCUAAGUUCCGC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925