Stem-loop ccr-mir-27d

Accession

MI0023385

Description

Cyprinus carpio ccr-mir-27d precursor miRNA

Literature search

3 open access papers mention ccr-mir-27d
(12 sentences)

Sequence

1719151 reads, 8808.0 reads per million, 33 experiments

ucuaagcgggugcAGAGCUUAGCUGAUUGGUGAACaugcacgcuuuguuuuuugUUCACAGUGGCUAAGUUCUUCaccugaaaagaaa
(((...((((((.(((((((((((.((((.((((((...((.....))....))))))))))))))))))))).))))))...)))..

Structure

--   aag      c           G    G      -ugc  g 
  ucu   cgggug AGAGCUUAGCU AUUG UGAACa    ac c
  |||   |||||| ||||||||||| |||| ||||||    || u
  aga   guccaC UCUUGAAUCGG UGAC ACUUgu    ug u
aa   aaa      U           -    -      uuuu  u 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-27d-5p

• Accession: MIMAT0058323
• Description: Cyprinus carpio ccr-miR-27d-5p mature miRNA
• Sequence: 14 - AGAGCUUAGCUGAUUGGUGAAC - 35
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-27d-3p

• Accession: MIMAT0026285
• Description: Cyprinus carpio ccr-miR-27d-3p mature miRNA
• Sequence: 55 - UUCACAGUGGCUAAGUUCUUC - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925