Stem-loop ccr-mir-29b

Accession

MI0023387

Description

Cyprinus carpio ccr-mir-29b precursor miRNA

Literature search

2 open access papers mention ccr-mir-29b
(2 sentences)

Sequence

143771 reads, 568.0 reads per million, 33 experiments

gcaauccuggacgcuuccuccggaugCUGGUUUCACAUGGUGGUUUAGAUGuguucuacgauaguguucuaccaguguucUAGCACCAUUUGAAAUCAGUGUUccugggguaagggaauugc
((((((((..((....(((..((((((((((((((.((((((.(.((((.....)))).((((.((......)).))))..).)))))).))))))))))))))..)))))..))).)))))

Structure

     -   gg  gcuu   cc              C      G ----------------------U    U 
gcaau ccu  ac    ccu  ggaugCUGGUUUCA AUGGUG U                       UAGA G
||||| |||  ||    |||  |||||||||||||| |||||| |                       |||| u
cguua ggg  ug    ggg  cUUGUGACUAAAGU UACCAC A                       aucu g
     a   aa  ----   uc              U      G Ucuugugaccaucuugugauagc    u 

Annotation confidence Medium

Genome context

Unknown

Mature ccr-miR-29b-5p

• Accession: MIMAT0058325
• Description: Cyprinus carpio ccr-miR-29b-5p mature miRNA
• Sequence: 27 - CUGGUUUCACAUGGUGGUUUAGAUG - 51
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-29b-3p

• Accession: MIMAT0026287
• Description: Cyprinus carpio ccr-miR-29b-3p mature miRNA
• Sequence: 81 - UAGCACCAUUUGAAAUCAGUGUU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925